Resources

This page lists relevant resources to the OKBQA hackathon with specification to the contact person.

QA

• LODQA - Natural language query processing system over LOD (Jin-Dong Kim, Kevin Cohen)

• TBSL - Template-based Question Answering over RDF data

Text Annotation

• PubDictionaries - Dictionary-based text and term annotation (Jin-Dong Kim)

• NCBO annotator - annotate text using bioportal ontologies using exact or substring matches (Michel Dumontier)

• DBpedia Spotlight - looks for ~3.5M things of unknown or ~320 known types in text and tries to link them to their global unique identifiers in DBpedia.

Ontology Search

• BioPortal - search the repository of 6M terms in 375+ ontologies (Michel Dumontier)

• OntoFinder - Biomedical ontology search and term collection (Jin-Dong Kim)

KBs and Linked Open Data Projects

relevant subsets

• DBpedia

• Bio2RDF - release 3 (2014)

  • CTD

  • ClinicalTrials

  • DrugBank

  • NDC

  • SIDER

• BioGateway - release 2 (2014)

  • UniProt

  • Entrez

  • OBO foundry ontologies

  • IntAct

  • GOA annotations

• EBI RDF

  • ChEMBL

  • Reactome

Benchmark data

• QALD

• BioASQ